Blog

 

Written by Julie Bick, Ph.D.

Introduction

Medication Safety Week serves as a crucial reminder of the importance of ensuring that medications are used safely and effectively. While traditional medication practices rely on general guidelines, the field of pharmacogenomics (PGx) is changing the way drugs are prescribed and administered and moving us towards a precision medicine approach to healthcare. By leveraging genetic information, PGx allows for more precise, personalized treatments that minimize adverse drug reactions (ADRs), manage side-effects and optimize therapeutic outcomes.

In this blog post to mark Medication Safety Week, we explore the significance of PGx in medication safety, its applications in various medical fields, real-world success stories and what the future holds for this game-changing test for enhanced therapeutic interventions.

Understanding PGx

PGx is the study of how an individual's genetic makeup influences their response to medications, and we have described this technology in many of our previous blog posts. Traditional prescribing methods operate on a "one-size-fits-all" approach, often leading to variability in drug efficacy and safety. PGx helps bridge this gap by identifying genetic variants that impact drug absorption, metabolism, efficacy, and, importantly for Medication Safety Week, its potential toxicity.

Fig 1 Key concepts in PGx. Pharmacogenes encode proteins that affect drug absorption, metabolism, and excretion, or are the direct targets for drugs- some key genes are highlighted in this graphic along with the tissues where they are most highly expressed. Profiling the genes involved in these processes is used to identify the metabolism status of an individual for that drug. By integrating PGx into clinical practice, healthcare providers can tailor medication choices and doses to each patient’s genetic profile, thereby enhancing both the safety and effectiveness of the medication.

How PGx Enhances Medication Safety

There are a number of different ways that PGx testing is being used to improve drug safety, but one key area is in the identification of an individual’s risk of Adverse Drug Reactions (ADRs). Even though most of us never think about them, ADRs are a leading cause of hospitalizations and medication-related deaths, and in the US 3-8% of hospital admissions are related to ADRs (Einarson 1993; Moore et. al. 1998). PGx is being used to predict a patient’s risk of ADR by identifying pharmacogene variants that significantly impact how this patient metabolizes certain drugs, resulting in potentially toxic levels of the drug; one of the most commonly cited examples describes variants of the CYP2C19 gene that can result in a reduced response to the blood thinner clopidogrel. CYP2C19 intermediate and poor metabolizers who receive clopidogrel do not process the drug to its active form and therefore experience reduced platelet inhibition and increased risk for major cardiovascular and cerebrovascular (Dean and Kane, 2012). Another commonly referred to example involves individuals with variants in TPMT resulting in reduced enzyme activity who may experience severe toxicity or bone marrow suppression to thiopurine medications such as azathioprine or 6-mercaptopurine (Wei et. al. 2012; Wilke et. al. 2009).

There are caveats to the impact of pharmacogene variants based on if the medication is administered in the active form of the drug, or as a so-called prodrug that the body converts into the pharmacologically active drug. PGx-driven metabolic profiles range from ultra-poor metabolizers (no or very low enzyme activity) through to intermediate and normal metabolizers (low to normal enzyme activity) up to ultrarapid metabolizers (very high enzyme activities). The impact of the patient’s metabolic profile on the response to the medication, is different for drugs versus prodrugs, as summarized below in Fig. 2.

As more pharmacogenes are identified and clinical data supporting their impact on the safety of various drugs is published, PGx testing is proving to be a simple and cost- effective tool for enhanced patient safety. ADRs are a significant public health issue, that for the most part is preventable (Weiss et. al. 2024), and PGx testing is a key part to that prevention.

ADRs are classified in two distinct forms, Type A that represent an extension of the drug’s therapeutic effect and are therefore dose-related; and Type B that are more unpredictable and often idiopathic. However, PGx testing is useful in the prediction of risk for both Type A and B ADRs with the growing understanding of how pharmacogenes impact drug metabolism. Since all drugs have the potential for ADRs, the clinician needs to balance the risk and benefit when a new medication is prescribed, and PGx guidelines are now a central component in this determination.

Fig. 2. PGx testing is used to generate a metabolic profile for an individual based on the variants of the pharmacogenes involved in the processing of the drug. The effect of this metabolic profile is different for medications where in administered drug is in the active form versus prodrugs, which are metabolized to the active therapeutic molecule. It is important to understand these differences to flag individuals who are at risk of ADRs from certain medications based on their metabolic profiles.

Table 1 summarizes a list of common medications with risks for severe liver damage, along with the key pharmacogene variants associated with this risk; this is by far from a complete list, and to date there are more than 217 medications with PGx guidelines associated with their use https://www.personalizedmedicinecoalition.org/research/pgx-drug-gene-associations/

DrugGene(s)Drug classForm of toxcity
XimelagatranDRB1*07
DQA1*02
Oral thrombin inhibitorElevation in transaminase
TolcaponeUGT1A16Catechol-O-methyltran sferase inhibitorAsymptomatic Liver transaminase elevation
DiciofenacUGT2B7
CYP2C8
ABCC2
NSAIDRange from acute liver failure to non-specific symptoms with transaminase elevation
TranilastUGT1A1TGF-a antagonistUnconjugated hyper-bilirubinaemia
IsoniazidCYP2E1
NAT2
AntibioticElevation in serum transaminases
IsoniazidGSTM1
NAT2
AntibioticIcteric hepatitis (serum bilirubin > 3.0 mg/dL)
IsoniazidDRB1*03AntibioticElevation in serum bilirubin or transaminases
RifampinDQA1*0102
EthambutolDQB1*0201
Pyrizinamide
Streptomycin
Amoxicillin/clavulinic acidDRB1*1501DRB5*0101DQA1*0102D
QB1*0602
Antibiotic/penicillin analogueJaundice and elevation in serum bilirubin
TacrineGST T1
GST M1
ParasympathomimeticElevation in serum transaminases
TroglitazoneGSTT1
GSTM1
ThiazolidinedioneElevation in serum transaminases

Table 1. Selected reports of genetic associations with drug-induced liver injury and serious drug reactions. Adapted from Wilke et. al. 2007

Personalizing Drug Dosing

PGx is also increasingly being used to guide safer and more effective drug dosing in clinical practice. This has multiple effects, from reducing the severity and risk of side-effects, to increased drug efficacy and patient adherence.

An example often cited is around the use of codeine for pain management. Codeine is metabolized into morphine via the CYP2D6 enzyme. Both CYP2D6 poor metabolizers and ultrarapid metabolizer patient groups are not suitable candidates for codeine therapy – poor metabolizer may experience diminished analgesia, since the codeine is not metabolized into morphine at a sufficient rate to provide pain relief; on the other hand, CYP2D6 ultra-rapid metabolizers risk serious toxicity or even codeine intoxication (Gasche et. al. 2004) and studies have shown that the ultra-metabolizer profile is associated with higher rates of codeine use disorder (CUD) (Daglish et. al. 2023)

But probably the poster child for PGx-guided dosing is for the anti-coagulant drug, warfarin. Warfarin is a commonly prescribed medication (>2 million patients per year in the US), that unfortunately is associated with a high rate of adverse events (Putriana et. al. 2022). Warfarin has an extremely narrow therapeutic window and high risk of hazard outside of this window; this is coupled with significant variability in individual responses to the drug with maintenance doses range from 0.5-25mg. Warfarin is a major cause of ADRs, with an estimated 60% of ADR-related hospitalizations due to its use (Routledge et. al. 2004). Given these challenges, there have been various efforts to identify tools for optimal warfarin dosing that incorporate PGx testing for CYP2D9 (the main metabolic enzyme for warfarin) CYP4F2 (proposed involvement in vitamin K pathway) and VKORC1 (the target protein for warfarin’s therapeutic activity), alongside other factors such as INR test results and polypharmacy.

Fig. 3 summarizes the effects these components have on warfarin dose, and collectively these have been used to develop protocols that are addressing the significant safety issues for warfarin-based therapy (Gulseth et. al. 2009; Shahabi et. al. 2016).

Fig. 3. Relative predictive impacts of factors influencing a patient’s optimal warfarin dose.

VKORC1
1639 G>A
CYP4F2CYP2C9 (example genotypes)
V433M (C>T)*1/*1*1/*2*1/*3*2/*2*2/*3*3/*3
GGCCSTD (41mg)STD (41mg)LD (28mg)LD (28mg)LD (28mg)LD (28mg)
GGCTHD (44mg)STD (41mg)STD (41mg)STD (41mg)LD (28mg)LD (28mg)
GGTTHD (44mg)STD (41mg)STD (41mg)STD (41mg)LD (28mg)LD (28mg)
AGCCSTD (41mg)LD (28mg)LD (28mg)LD (28mg)LD (28mg)VLD (13.5mg)
AGCTSTD (41mg)LD (28mg)LD (28mg)LD (28mg)LD (28mg)LD (28mg)
AGTTSTD (41mg)LD (28mg)LD (28mg)LD (28mg)LD (28mg)LD (28mg)
AACCLD (28mg)LD (28mg)LD (28mg)LD (28mg)VLD (13.5mg)VLD (13.5mg)
AACTLD (28mg)LD (28mg)LD (28mg)LD (28mg)VLD (13.5mg)VLD (13.5mg)
AATTLD (28mg)LD (28mg)LD (28mg)LD (28mg)VLD (13.5mg)VLD (13.5mg)

Table 2. CPMC-WD Therapeutic warfarin dosing (mg/week) based on CYP2C9, CYP4F2 and VKORC1 variants -algorithm is used to determined optimal dose (www.warfarindosing.org).  (Shahabi et. al. 2016)

Warfarin dosing is being optimized using a variety of tools that enhance precision and minimize risks of potentially lethal adverse effects. Clinical decision support systems (CDSS) integrate patient data such as INR (International Normalized Ratio) values and PGx profiles for CYP2C9, CYP4R2 and VKORC1 variants (Table 2) to make clinically driven dosing adjustments for enhanced patient safety.  The incorporation of Machine learning algorithms that analyze a patient history and risk factors are also helping to refine dosing recommendations, and as such promoting safer long-term use of this critical drug.

Final Thoughts

Medication Safety Awareness Week emphasizes the importance of safe medication practices to prevent errors, adverse drug reactions, and misuse.  It is a multifaceted endeavor requiring oversight at many levels starting with clinicians and pharmacists who should work together to verify prescriptions, and provide clear communication about medication purposes, side effects, and safe storage that are all crucial for patient adherence and safety. Patients should be educated to follow prescribed dosages, schedules, and instructions to ensure effectiveness and avoid harmful effects; and as the patient’s therapy continues, healthcare providers should regularly review patient medications to prevent harmful drug interactions and duplications and incorporate PGx to strengthen medication management and reduce polypharmacy and the dangers it brings.

This week serves as a reminder for healthcare professionals and the public to take simple proactive steps and incorporate innovative tools such as PGx testing to help ensure medication safety and better health outcomes for all.

References

Einarson TR. Drug-related hospital admissions. Ann Pharmacother. 1993;27:832–840. doi: 10.1177/106002809302700702.

Moore N, Lecointre D, Noblet C, Mabille M. Frequency and cost of serious adverse drug reactions in a department of general medicine. Br J Clin Pharmacol. 1998 Mar;45(3):301-8. doi: 10.1046/j.1365-2125.1998.00667.x. PMID: 9517375; PMCID: PMC1873369.

Chun-Yu Wei, Ming-Ta Michael Lee, Yuan-Tsong Chen, Pharmacogenomics of adverse drug reactions: implementing personalized medicine, Human Molecular Genetics, Volume 21, Issue R1, 15 October 2012, Pages R58–R65, https://doi.org/10.1093/hmg/dds341

Wilke RA, Lin DW, Roden DM, Watkins PB, Flockhart D, Zineh I, Giacomini KM, Krauss RM. Identifying genetic risk factors for serious adverse drug reactions: current progress and challenges. Nat Rev Drug Discov. 2007 Nov;6(11):904-16. doi: 10.1038/nrd2423. Erratum in: Nat Rev Drug Discov. 2008 Feb;7(2):185. PMID: 17971785; PMCID: PMC2763923.

Dean L, Kane M. Clopidogrel Therapy and CYP2C19 Genotype. 2012 Mar 8 [Updated 2022 Dec 1]. In: Pratt VM, Scott SA, Pirmohamed M, et al., editors. Medical Genetics Summaries [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2012- https://www.ncbi.nlm.nih.gov/books/NBK84114

Weiss AJ, Freeman WJ, Heslin KC, et al. Adverse drug events in U.S. hospitals, 2010 versus 2014. Agency for Healthcare Research and Quality. Statistical Brief #234. January 2018. Accessed November 7, 2024.

Volodya Hovhannisyan,Abdel-Karim Berkati,Marine Simonneaux,Florian Gabel,Virginie Andry,Yannick Goumon,Sex differences in the antinociceptive effect of codeine and its peripheral but not central metabolism in adult mice, Neuropharmacology, 264, (110228), (2025).

https://doi.org/10.1016/j.neuropharm.2024.110228

Daglish, M.R.C., Reilly, S.R., Mostafa, S. et al. Cytochrome P450-2D6 activity in people with codeine use disorder. Pharmacogenomics J 23, 195–200 (2023). https://doi.org/10.1038/s41397-023-00319-6.

Putriana NA, Rusdiana T, Rostinawati T, Akbar MR, Destiani DP. Evaluation of adverse drug reaction in patients warfarin therapy. J Adv Pharm Technol Res. 2022 Oct-Dec;13(4):291-295. doi: 10.4103/japtr.japtr_439_22. Epub 2022 Oct 10. PMID: 36568047; PMCID: PMC9784044.

Routledge PA, O'Mahony MS, Woodhouse KW. Adverse drug reactions in elderly patients. Br J Clin Pharmacol. 2004;57:121–6. doi: 10.1046/j.1365-2125.2003.01875.x.

Gulseth MP, Grice GR, Dager WE. Pharmacogenomics of warfarin: Uncovering a piece of the warfarin mystery. Am J Health Syst Pharm. 2009;66:123–33. doi: 10.2146/ajhp080127.

Shahabi, Payman & Scheinfeldt, Laura & Lynch, Daniel & Schmidlen, Tara & Perreault, Sylvie & Keller, Margaret & Kasper, Rachel & Wawak, Lisa & Jarvis, Joseph & Gerry, Norman & Gordon, Erynn & Christman, Michael & Dubé, Marie-Pierre & Gharani, Neda. (2016). An expanded pharmacogenomics warfarin dosing table with utility in generalised dosing guidance. Thrombosis and haemostasis. 116. 10.1160/TH15-12-0955.

Contact Us Button